I think the remnote clipper would improve workflow functionality if you had the option to import text to any document you are working in, instead of having the clipper linked to one page.
Ideally also with a pin reference.
The Set New Parent/Move options (Ctrl + Shift + M, /move and Document Menu -> Move) should allow you to move either the entire document or a portion of it out of the Links Document, without opening the whole RemNote web app.
You can choose any target Document or Hierarchy, just as if you were using those options in the full app.
This can be done by Clicking the Continue Editing to open the Clipper’s side document (the one that opens on the left side of the screen after you click).
While the Clipper is set to automatically create a Document inside Links, you can ignore that function and use the Sidebar inside the same side document to navigate to any other document or to create a new Document, and manually add notes there.
Do you feel the current implementation doesn’t cover the workflow you are mentioning? 
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